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Path-space variational inference for non-equilibrium coarse-grained systems
Vagelis Harmandaris, Evangelia Kalligiannaki, Markos Katsoulakis and Petr Plecháč Journal of Computational Physics 314 355 (2016) https://doi.org/10.1016/j.jcp.2016.03.021
Parametric sensitivity analysis for stochastic molecular systems using information theoretic metrics
Anastasios Tsourtis, Yannis Pantazis, Markos A. Katsoulakis and Vagelis Harmandaris The Journal of Chemical Physics 143(1) (2015) https://doi.org/10.1063/1.4922924
Kullback--Leibler Approximation for Probability Measures on Infinite Dimensional Spaces
F. J. Pinski, G. Simpson, A. M. Stuart and H. Weber SIAM Journal on Mathematical Analysis 47(6) 4091 (2015) https://doi.org/10.1137/140962802
Coarse-graining schemes for stochastic lattice systems with short and long-range interactions
Spatial Two-Level Interacting Particle Simulations and Information Theory--Based Error Quantification
Evangelia Kalligiannaki, Markos A. Katsoulakis and Petr Plecháč SIAM Journal on Scientific Computing 36(2) A634 (2014) https://doi.org/10.1137/120887060
Information-theoretic tools for parametrized coarse-graining of non-equilibrium extended systems
Evangelia Kalligiannaki, Markos A. Katsoulakis and Petr Plecháč Lecture Notes in Computational Science and Engineering, Numerical Analysis of Multiscale Computations 82 235 (2012) https://doi.org/10.1007/978-3-642-21943-6_11
Multilevel coarse graining and nano-pattern discovery in many particle stochastic systems
Evangelia Kalligiannaki, Markos A. Katsoulakis, Petr Plecháč and Dionisios G. Vlachos Journal of Computational Physics 231(6) 2599 (2012) https://doi.org/10.1016/j.jcp.2011.12.011
From Mesoscale Back to Microscale: Reconstruction Schemes for Coarse-Grained Stochastic Lattice Systems
José Trashorras and Dimitrios K. Tsagkarogiannis SIAM Journal on Numerical Analysis 48(5) 1647 (2010) https://doi.org/10.1137/080722382
Multibody Interactions in Coarse-Graining Schemes for Extended Systems
Sasanka Are, Markos A. Katsoulakis, Petr Plecháč and Luc Rey-Bellet SIAM Journal on Scientific Computing 31(2) 987 (2009) https://doi.org/10.1137/080713276
Numerical and Statistical Methods for the Coarse-Graining of Many-Particle Stochastic Systems